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Old Jan 27, 2020, 9:09 am
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Coronavirus / COVID-19 : general fact-based reporting

 
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Old Feb 9, 2021, 1:23 pm
  #7396  
 
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Novavax's vaccine seems to be A+!

Researchers in the United States have identified specific immune correlates that might be key to ensuring that vaccination against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) protects against not only disease but also viral transmission and emerging variants.The SARS-CoV-2 virus is the agent responsible for the coronavirus disease (COVID-19) pandemic that has claimed the lives of more than 2.32 million people globally.

In a unique vaccine study designed to assess the importance of antigen-dose and boosting, the team carefully interrogated key correlates of immunity against upper and lower respiratory tract infection in rhesus macaques.

Following a single dose of Novavax’s COVID-19 vaccine (NVX-CoV2373), the induction of robust antibody titers and neutralizing activity partially protected against viral replication in the upper respiratory tract.

However, animals that received a second dose exhibited complete protection against infection in the upper and lower respiratory tract. This improved protection following a second immunization was associated with a dramatic maturation of antibody effector functions that correlated with highly functional neutralization.
https://www.news-medical.net/news/20...-variants.aspx
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Old Feb 9, 2021, 1:27 pm
  #7397  
 
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Originally Posted by LAXlocal
Are they doing the same amount of tests ?

is the positive rate per 1000 going down as much ?
The positivity rate nationally is down around 50% in the last month. 6.9% right now for the 7 day average per Johns Hopkins. Testing numbers overall are down which makes sense as fewer sick people means fewer people seeking out tests.

https://coronavirus.jhu.edu/testing/individual-states
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Old Feb 9, 2021, 3:11 pm
  #7398  
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Originally Posted by doctoravios
This is the most realistic synopsis I have read so far relating to the utility of COVID-19 vaccines and the likely outcome of the pandemic:



As I have previously thought, I believe herd immunity (as defined in this article) is impossible for COVID-19 with or without a vaccine.

https://www.theatlantic.com/health/a...ccines/617973/
Originally Posted by JNelson113
I have read that coronavirus is likely here to stay but the hope is that the vaccines can greatly lessen the chances of severe illness or death.
Originally Posted by lobo411

Hopefully what they observed with those animal tests will turn out to apply to humans vaccinated with this vaccine.

I would hope they’re running similar tests on humans vaccinated with the other vaccines, that is measure viral load in the upper respiratory as well as lower respiratory tracts.

Whenever a person who’s gotten full doses of vaccines test positive, they should be measuring the viral load.

but a lot of infections to vaccinated people may be asymptomatic so they wouldn’t be tested at all.

I think there was one informal study where the Israelis were going to periodically test health care workers periodically whether or not they had symptoms.
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Old Feb 9, 2021, 4:36 pm
  #7399  
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Good (quick) read on what might be next in the pandemic by Australian epidemiologist Gideon M-K.
The End Of The COVID-19 Pandemic: What do we have to look forward to?
Fortunately, there’s a light at the end of the tunnel. Vaccines are here, and they’re already being rolled out across the globe, with hundreds of millions getting safety injected into their arms already.But that raises the question: what will the world look like when this is all over? What happens when a pandemic has run its path?...

One thing we can say with some certainty is that COVID-19 is probably never going away entirely. There are very few ways that we could completely eradicate the disease...

The pandemic might live on, but it will finally be something we can live with, rather than something that rules our lives...
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Old Feb 9, 2021, 6:51 pm
  #7400  
 
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Originally Posted by doctoravios
This is the most realistic synopsis I have read so far relating to the utility of COVID-19 vaccines and the likely outcome of the pandemic:

Quote: While COVID-19 vaccines are very good—even unexpectedly good—at preventing disease, they are still unlikely to be good enough against transmission of the virus, which is key to herd immunity. On the whole, we should expect immunity to be less effective against transmission than against disease, to wane over time, and to be eroded by the new variants now emerging around the world. If vaccine efficacy against transmission falls below the herd-immunity threshold, then we would need to vaccinate more than 100 percent of the population to achieve herd immunity. In other words, it becomes downright impossible.

As I have previously thought, I believe herd immunity (as defined in this article) is impossible for COVID-19 with or without a vaccine.

https://www.theatlantic.com/health/a...ccines/617973/
Looks fair. I'm still holding a slightly more positive view; maybe better to say there still feel to be some ways through.

On the one side the risk remains real that Covid-19 will impact enough individuals a second (and by extension third) time to out-run the problem the virus faces when its got to (nearly) everyone once.
On the other side, I feel the vaccine technologies and progress in scaling-up should (a big should there!) continue to buy time against new variants and also lower overall hospitalisation rates significantly. Leaving space for better research and targetting of transmission. For example, we've read previously about various sprays and other upper tract focus. For example, presumably drugs can also be developed aiming at the transmission elements of the virus.
Thirdly, maybe a weaker less deadly but dominant variant will emerge somewhere .... and we all give up and simply return to an accepted new normal.

One thing I have been watching is the cumulative population case levels, pre vaccines impacting the data. South Africa turned away their 2nd wave at somewhere around 25% having been infected. The US seems to be doing the same at more like 33%. Its not super clear to me the size of the mountains the vaccines really need to climb.

Last edited by littlefish; Feb 9, 2021 at 6:57 pm
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Old Feb 9, 2021, 11:13 pm
  #7401  
 
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Originally Posted by littlefish
.

One thing I have been watching is the cumulative population case levels, pre vaccines impacting the data. South Africa turned away their 2nd wave at somewhere around 25% having been infected. The US seems to be doing the same at more like 33%. Its not super clear to me the size of the mountains the vaccines really need to climb.
These percentages do not mean the cases will continue to subside. They are the peak of the respective wave, but without other interventions the cases will hit at certain lower percentage levels then start the next way up. That is how linear wave dynamics work: two counteracting forces create the oscillation. When vulnerable persons become less available as infection rate increases, the case numbers will stop rising and begin to go down. When more people (those not yet infected, and those whose immunity after an earlier infection wane) come out of isolation the infection rate will go back up. More contagious variants help the upward force and more effective vaccines help the downward force. The waves can be dissipated if vaccines and health measures can suppress the viruses to below a critical level, when the linear dynamics is destroyed. Since both the vaccine effectiveness and the degree of virus infectiousness are functions of time, there is a lot of potential nonlinearity. Whether we can get out of the wave oscillation depend on how these functions varying in time. Since recalibrating vaccines follows the mutation of viruses with a time lag, the pandemic can be put out only if the mutation occurs at a rate slower than the vaccine improvement.
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Old Feb 10, 2021, 12:01 am
  #7402  
 
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Originally Posted by VCURamFan
The positivity rate nationally is down around 50% in the last month. 6.9% right now for the 7 day average per Johns Hopkins. Testing numbers overall are down which makes sense as fewer sick people means fewer people seeking out tests.

https://coronavirus.jhu.edu/testing/individual-states
It’s definitely good news to see the biggest surge finally subsiding -- and I have seen plenty of “mainstream” news/media here showing the good news of declining cases and hospitalization numbers (and for us what/when that means for moving to the next “tier” of relaxed restrictions). Using 7-day averages, we’re almost down to the case level of the beginning of November. Deaths are declining at a much flatter rate so far, near early January levels; that’s expected as deaths lag diagnoses, so we should expect improvement there too over the next few weeks.

The unknown is where the numbers will bottom out in the US -- after the first wave we settled at ~20,000 cases and ~500 deaths per day, then after the second wave it was ~40,000 cases and ~700 deaths per day. And then it’s a wait and see if increasing vaccination rates and continued vigilance will be enough to stave off another wave or keep it lower.
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Old Feb 10, 2021, 2:39 am
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Over here in India we hit the peak in September and it's been going down since then. Back in September the reported daily cases hit almost 100,000. Currently its ~ 10,000 daily reported cases. Daily deaths too peaked at 1,200 in September. Current daily deaths are ~ 100. The actual Covid-19 cases will be much higher than reported but the death figures are probably pretty accurate.

Basis a recent sero survey done experts estimate that 21% of India's population has antibodies. ICMR sero survey: One in five Indians exposed to Covid-19 - BBC News.

A total of ~ 200 million Covid-19 tests have been conducted from March till January. From a peak of ~ 1.5 million tests a day in September we are down to ~ 700,000 daily tests now. Positivity rate was ~ 6% in September. It is now ~ 1.5%.

People here were extremely cautious from March - August but things have been opening up since then. Now almost every thing has opened up and people aren't as cautious as well. Hotels, restaurants, bars, etc. are extremely crowded and busy. People are gathering in big numbers as well.

We expected it to spike as things started opening up and winter came (it gets very cold in parts of India) but the opposite has happened. Even NPR did a segment on this recently.

Experts Trying To Uncover Why COVID-19 Cases Are Falling In India : NPR

Why Did COVID-19 Cases Dramatically Decline In India? : Goats and Soda : NPR

Any thoughts on why Covid-19 has reduced so much here?
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Last edited by piyush; Feb 10, 2021 at 3:05 am
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Old Feb 10, 2021, 4:58 am
  #7404  
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Originally Posted by piyush
Over here in India we hit the peak in September and it's been going down since then. Back in September the reported daily cases hit almost 100,000. Currently its ~ 10,000 daily reported cases. Daily deaths too peaked at 1,200 in September. Current daily deaths are ~ 100. The actual Covid-19 cases will be much higher than reported but the death figures are probably pretty accurate.
Deaths in India are under-reported, probably vastly underreported.

As India becomes the country third worst hit by covid-19, with over 900 000 cases to date, stories about unreported deaths are rising across the country. The governments of multiple cities, including Chennai, Delhi, Hyderabad, Mumbai, and Vadodara, have been accused of hiding covid-19 deaths. This undercounting is often deliberate and fuelled by the political need for state governments to portray success in their outbreak containment efforts, says T Sundarraman, a health systems researcher based in Puducherry. It’s a big problem, he says, because suppressing mortality data “lowers the degree of caution among people.”

The Indian central health ministry has frequently cited these low mortality rates as evidence that its outbreak control measures have been effective. With 18 covid-19 deaths per million people at the time of writing, India does seem to be doing dramatically better than other badly hit countries like the US (420 deaths per million) and Brazil (349 deaths per million). While some of this could be explained by India’s relatively younger population, Sundarraman says that if the undercounting of deaths was accounted for, Indian mortality numbers would definitely rise.
https://www.bmj.com/content/370/bmj.m2859

West Bengal’s ‘official’ coronavirus death toll has doubled in the five days since the state virtually shelved its Covid-19 death audit committee in the face of a raging controversy.

While the state attributed 33 deaths to Covid-19 between March 23 and April 30, another 35 deaths were reported in the last five days.

This steep rise in the death toll is largely because the state, between April 1 and April 30, attributed 72 deaths to comorbidity, a practice that stopped on April 30. Since May 1, the state has not attributed a single death to ‘comorbidity’. However, on Tuesday it maintained that the death toll stood at 68. This meant, even though the state was no longer attributing deaths to comorbidity, it would not include those already attributed to comorbidity, into its official death toll.
https://www.hindustantimes.com/india...GRbdOQbQM.html
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Old Feb 10, 2021, 7:47 am
  #7405  
 
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Vaccines Need Not Completely Stop COVID Transmission to Curb the Pandemic
(Scientific American)

Lessons from other viruses show that even if vaccines don’t completely stop disease spread, they can still successfully contain it.
...
Research on seasonal coronaviruses suggests that SARS-CoV-2 could similarly evolve to evade our immune systems and vaccination efforts, though probably at a slower pace. And data remain mixed on the relationship between symptoms, viral load and infectiousness. But ample precedent points to vaccines driving successful containment of infectious diseases even when they do not provide perfectly sterilizing immunity. “Measles, diphtheria, pertussis, polio, hepatitis B—these are all epidemic-prone diseases,” Crowcroft says. “They show that we don’t need 100 percent effectiveness at reducing transmission, or 100 percent coverage or 100 percent effectiveness against disease to triumph over infectious diseases.”
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Last edited by NewbieRunner; Feb 10, 2021 at 8:49 am Reason: Added source info to comply with FT rule #7
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Old Feb 10, 2021, 8:19 am
  #7406  
 
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Originally Posted by fransknorge
Deaths in India are under-reported, probably vastly underreported.



https://www.bmj.com/content/370/bmj.m2859



https://www.hindustantimes.com/india...GRbdOQbQM.html
These are articles from 6-8 months ago. I'm living here and while I'm sure cases and to a certain extent deaths are understated it doesn't change the fact that the numbers are down drastically from the peak. Most states have even shut down several covid treatment centers that they had started.

In our capital there have been 100,000+ people protesting since a couple of months. Most aren't even wearing masks.

Really makes me wonder why Covid cases and deaths are going down so much.
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Old Feb 10, 2021, 10:33 am
  #7407  
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Past exposure to other coronaviruses don't seem to provide protection to Covid-19.

Overall, a bit over 4 percent of the pre-pandemic individuals had antibodies that reacted with the spike protein that's found on the surface of the SARS-CoV-2 virus. Of those, only 1 percent specifically targeted the region that the virus uses to attach to cells. By contrast, about 16 percent of these individuals had antibodies that recognized the protein that forms the virus's surface coating.

Even when antibodies that targeted SARS-CoV-2 were present in these individuals, few of them blocked the virus's ability to infect cells. That was in sharp contrast to the antibodies produced after SARS-CoV-2 infection, which were frequently able to block further infections. And the antibodies that existed before the pandemic didn't have any obvious impact on the progression of COVID-19 symptoms.

Obviously, our immune system's response to cold viruses seems to fade over time. So, the researchers redid their analysis using only those participants who had had a cold within the past year. This made no difference.

Despite the fact that these antibodies seemed to be ineffective in terms of blocking SARS-CoV-2, their numbers were boosted following a case of COVID-19. This isn't surprising, since they did in fact recognize the virus. But it seems like more of an accidental side effect of infection than a product of a robust immune response.
https://arstechnica.com/science/2021...st-sars-cov-2/


So now, vaccines or bust.
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Old Feb 10, 2021, 7:29 pm
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Doesn't apply to travel quarantines, but it's progress:

People who have been fully vaccinated against coronavirus -- right now that means with two doses of either the Pfizer/BioNTech or Moderna vaccine -- can skip quarantine if they are exposed to someone infected with the virus, the US Centers for Disease Control and Prevention said Wednesday.
https://www.cnn.com/2021/02/10/healt...nce/index.html
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Old Feb 10, 2021, 11:33 pm
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Originally Posted by jmastron
It’s definitely good news to see the biggest surge finally subsiding -- and I have seen plenty of “mainstream” news/media here showing the good news of declining cases and hospitalization numbers (and for us what/when that means for moving to the next “tier” of relaxed restrictions). Using 7-day averages, we’re almost down to the case level of the beginning of November. Deaths are declining at a much flatter rate so far, near early January levels; that’s expected as deaths lag diagnoses, so we should expect improvement there too over the next few weeks.

The unknown is where the numbers will bottom out in the US -- after the first wave we settled at ~20,000 cases and ~500 deaths per day, then after the second wave it was ~40,000 cases and ~700 deaths per day. And then it’s a wait and see if increasing vaccination rates and continued vigilance will be enough to stave off another wave or keep it lower.
ID experts lament their limited understanding of the seasonal patterns behind endemic infectious diseases. We can hope that risk factors will change if and where natural and induced herd immunity emerges. Rising resistance that varies across populations might explain why some outbreaks are fading faster than others, but not necessarily the seasonality (which likely involves amenable traditions and habitation).

Gottlieb got some things right.
What's the backup plan if there's no COVID-19 vaccine?
- If enough people are infected waiting for a vaccine to emerge, the country could approach herd immunity and gain at least temporary respite from major outbreaks. Some experts have estimated reaching that point would require as much as 60 percent to 70 percent of the population to get infected, while others see a potentially lower threshold. -

- But some argue we’re likelier to reach that point earlier than we might think if current outbreaks worsen. Former FDA Commissioner Scott Gottlieb, a CNBC contributor who sits on the board of Pfizer, predicted that by early 2021, “we will either have a vaccine, or we will have herd immunity.”

The country probably won’t be celebrating either way, however. “We are a long way from it now, and a lot of death and disease until we get there,” Gottlieb said.

CDC forecast infections approaching 100 million, the vast majority of them unreported. The models offer both cautionary lessons and hopeful signs, assuming herd thresholds derive from long-lasting individual immunity.

The optimistic view:
CDC Estimates 83 Million U.S. COVID Infections. This Has Major Implications
- If this number is anywhere near accurate, it changes just about everything. Here are some of them:

1) The lockdowns didn't work as intended. It may be too early to say that lockdowns were an abject failure, but if there really are 83 million infected Americans, we can safely say that the lockdowns didn't work as intended. To be fair, it's far easier to make this statement in retrospect. In the middle of a pandemic, when people are dying left and right, a lockdown looks quite reasonable. In fact, lockdowns may be necessary to prevent overwhelming the healthcare system. -

2) The huge number of cases isn't because most infections are asymptomatic. The CDC estimates the overall infection rate to be 25,412 per 100,000 people and the symptomatic illness rate to be 21,532 per 100,000. That means about 85% of infections result in symptoms and only 15% are asymptomatic. –

3) We are much closer to herd immunity than we thought. Herd immunity can arise in one of two ways: Natural infection or vaccination. Once herd immunity is reached, the epidemic should end. (However, note that herd immunity does not mean "no more infections." Instead, it means that there are no more outbreaks, even though a low, baseline level of infection might still exist.) -
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Old Feb 11, 2021, 12:38 am
  #7410  
 
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Originally Posted by piyush
These are articles from 6-8 months ago. I'm living here and while I'm sure cases and to a certain extent deaths are understated it doesn't change the fact that the numbers are down drastically from the peak. Most states have even shut down several covid treatment centers that they had started.

In our capital there have been 100,000+ people protesting since a couple of months. Most aren't even wearing masks.

Really makes me wonder why Covid cases and deaths are going down so much.
You are asking a very reasonable question. It is not just India that is seeing cases come down where conventional logic would expect the opposite. You could look at your neighbour, Bangladesh, one of the most densely populated countries on the planet, but still seeing cases fall off. There are many others around the world too. One of the big failings in this epidemic IMHO is failing to look at what really is a risk factor for transmission. The restrictions we have in the UK and many other places are based on assumptions about how this virus spreads rather than any facts. We now see cases falling rapidly and no doubt politicians will argue that restrictions are working. But are they? Or would cases have come down anyway? You can make a strong argument that the policy here has failed and saddled us with huge debts and economic destruction.

There really needs to be some serious research into understanding what is going on. And it needs to looks at countries such as India so that better responses can be found. We have had a year of guessing, it is time for something better based on real scientific research.

Last edited by DaveS; Feb 11, 2021 at 2:15 am
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