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Old Jan 27, 2020, 9:09 am
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Coronavirus / COVID-19 : general fact-based reporting

 
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Old Mar 13, 2020 | 3:29 am
  #3856  
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Originally Posted by nk15
Interesting article from today's Financial Times, contains this alarming graph. It suggests that extremely aggressive measures are needed for any hope, if already not too late.

[link]

They should add Vietnam to the chart. They are taking strong measures, too, although not as extreme as Singapore's.
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Old Mar 13, 2020 | 5:22 am
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Originally Posted by PaulMSN
They should add Vietnam to the chart. They are taking strong measures, too, although not as extreme as Singapore's.
Vietnam would be below the x-axis. This chart is meaningless, because the definition of "case" varies by country, and the testing regime (and thus the proportion of infections that are actually detected and thus defined as a "case") varies by country.
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Old Mar 13, 2020 | 5:27 am
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Interesting report apparently from first hand account in Seattle.
https://threadreaderapp.com/thread/1...392039424.html
a bit scary too.
Any thoughts on these reports ?
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Old Mar 13, 2020 | 5:31 am
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Originally Posted by ricardojrsousa
Interesting report apparently from first hand account in Seattle.
https://threadreaderapp.com/thread/1...392039424.html
a bit scary too.
Any thoughts on these reports ?
An ICU physician would only see the most serious of cases so it's not surprising at all that many of them would die. The vast majority of infections won't lead to any physician visit at all.
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Old Mar 13, 2020 | 5:43 am
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Originally Posted by ricardojrsousa
Interesting report apparently from first hand account in Seattle.
https://threadreaderapp.com/thread/1...392039424.html
a bit scary too.
Any thoughts on these reports ?
That the Seattle doctor thought that the Wuhan statistics 80% mildly ill, 14% hospital-ill, 6-8% critically ill were generally on the mark, suggests to me that she is working in an area with a lower than average age. I understand that the average age in Seattle is 35 and I’d assume that there were districts within Seattle filled mainly with professionals who are not in close regular contact with their parents.
The average age in Madrid is rather higher than in both Seattle and Wuhan, and close links with the elderly are generally maintained (grandparents are a vital part of Spain’s childcare arrangements). Same is true in Italy.

Knowing this, the emergence of data from Madrid showing that the statistics have been 60% mildly ill, 30% Hospital-ill and 10% critically ill shows that the experience of Seattle may not be replicated in other cities, towns and regions across America. Particularly not once ICUs have been filled.

Testing has been performed widely (even if not exhaustively) throughout the community in Madrid, so the data isn’t terribly skewed towards the demographic most likely to succumb to complications. The testing protocols changed today, so this will no longer apply, but it did hold until earlier today.
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Old Mar 13, 2020 | 6:15 am
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Singapore meanwhile will deny from Monday entry or transit to visitors who have been in Italy, France, Spain or Germany in the last 14 days, as part of measures to control the fast-spreading coronavirus, the health ministry said on Friday.

https://www.arabnews.com/node/1640881/world

and most likely, in 2 weeks most countries will bar US citizens, since we are now in mitigation. I said this about the Wuhan outbreak and will say this about europe. In the data presented, the co-morbidities that made it worse were hypertension, diabetes, cardiovascular disease, and finally, chronic lung disease made the list. twenty percent of the population smoke and the majority are males 20 to 44. This could partially explain the higher rate of serious, and younger age.Finally a news report about it.

https://www.thesun.co.uk/news/111511...rus-tips-quit/
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Old Mar 13, 2020 | 6:19 am
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Originally Posted by notquiteaff
So Dr. Fauci is stupid?

https://khn.org/morning-breakout/thi...-u-s-outbreak/

Perhaps share what school conferred relevant medical degrees to you, what epidemics or pandemics you have fought, investigated or modeled at a reputable organization, or what else qualifies you to call others stupid. I am looking for something, anything that would help me find anything of value in your posts when I try to learn about the situation we are facing and discussing.

Clearly he not stupid, but I am confused by some of his statements. Last evening he was a guest on an ABC news show, "America This Week w/ Eric Bolling: 'Coronavirus - Plan Don't Panic'. In response to questions by Bolling, he blamed the current situation outside of China and South Korea, on Italy, that they did not confine travel. Wasn't Italy was actually the first EU nation to ban airline travel with China, days prior the US bans?
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Old Mar 13, 2020 | 8:18 am
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Originally Posted by cmtlatitudes
Clearly he not stupid, but I am confused by some of his statements. Last evening he was a guest on an ABC news show, "America This Week w/ Eric Bolling: 'Coronavirus - Plan Don't Panic'. In response to questions by Bolling, he blamed the current situation outside of China and South Korea, on Italy, that they did not confine travel. Wasn't Italy was actually the first EU nation to ban airline travel with China, days prior the US bans?
I think it's fair to say that the experts (i.e. people with experience in infectious diseases and global health) are just as much in the dark as anyone else as no-one has had any prior experience with COVID-19 and necessarily people have to speculate with their best "educated guess" on the evolution of this pandemic. And I think it is also fair to say that experts disagree with each other in certain respects.

However, this is not a bad thing. It is important that experts debate and challenge each others' views and there is not necessarily the "right" answer to a lot of the difficult questions coming up in recent weeks. For example, I disagree with the notion that we should be investing heavily in masks in Western countries but I may well be completely wrong on this - it's just my "best guess" based on the evidence I have interpreted but I could be wrong and am always willing to consider other views.
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Old Mar 13, 2020 | 8:35 am
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UCSF from March 11, this type of analysis is not altered by politics. Note the mention that the CDC was toying with the idea of banning commercial flights for those over 60. Guess what, they still may. There are plenty of laws the President can invoke, like shut down the internet, and all commercial flying.

Date: Wed, Mar 11, 2020 at 6:29 PM
Subject: Latest on COVID-19 from UCSF's top infection disease researchers
To:




With Brook Byer’s help I was able to arrange a discussion yesterday on COVID-19 with USCF’s top researchers in infectious disease. Here are the notes. I bolded some of the more notable comments from the researchers.



UC San Francisco is either the #1 or #2 hospital in California depending on which survey you read. It is the 4th largest medical research center in the US, based on research grants.



scott

University of California, San Francisco BioHub Panel on COVID-19

March 10, 2020
  • Panelists
    • Joe DeRisi: UCSF’s top infectious disease researcher. Co-president of ChanZuckerberg BioHub (a JV involving UCSF / Berkeley / Stanford). Co-inventor of the chip used in SARS epidemic.
    • Emily Crawford: COVID task force director. Focused on diagnostics
    • Cristina Tato: Rapid Response Director. Immunologist.
    • Patrick Ayescue: Leading outbreak response and surveillance. Epidemiologist.
    • Chaz Langelier: UCSF Infectious Disease doc


What’s below are essentially direct quotes from the panelists. I bracketed the few things that are not quotes.
  • Top takeaways
    • At this point, we are past containment. Containment is basically futile. Our containment efforts won’t reduce the number who get infected in the US.
    • Now we’re just trying to slow the spread, to help healthcare providers deal with the demand peak. In other words, the goal of containment is to "flatten the curve", to lower the peak of the surge of demand that will hit healthcare providers. And to buy time, in hopes a drug can be developed.
    • How many in the community already have the virus? No one knows.
    • We are moving from containment to care.
    • We in the US are currently where at where Italy was a week ago. We see nothing to say we will be substantially different.
    • 40-70% of the US population will be infected over the next 12-18 months. After that level you can start to get herd immunity. Unlike flu this is entirely novel to humans, so there is no latent immunity in the global population.
    • [We used their numbers to work out a guesstimate of deaths— indicating about 1.5 million Americans may die. The panelists did not disagree with our estimate. This compares to seasonal flu’s average of 50K Americans per year. Assume 50% of US population, that’s 160M people infected. With 1% mortality rate that's 1.6M Americans die over the next 12-18 months.]
      • The fatality rate is in the range of 10X flu.
      • This assumes no drug is found effective and made available.
    • The death rate varies hugely by age. Over age 80 the mortality rate could be 10-15%. [See chart by age Signe found online, attached at bottom.]
    • Don’t know whether COVID-19 is seasonal but if is and subsides over the summer, it is likely to roar back in fall as the 1918 flu did
    • I can only tell you two things definitively. Definitively it’s going to get worse before it gets better. And we'll be dealing with this for the next year at least. Our lives are going to look different for the next year.
  •  
    • What should we do now? What are you doing for your family?
      • Appears one can be infectious before being symptomatic. We don’t know how infectious before symptomatic, but know that highest level of virus prevalence coincides with symptoms. We currently think folks are infectious 2 days before through 14 days after onset of symptoms (T-2 to T+14 onset).
      • How long does the virus last?
        • On surfaces, best guess is 4-20 hours depending on surface type (maybe a few days) but still no consensus on this
        • The virus is very susceptible to common anti-bacterial cleaning agents: bleach, hydrogen peroxide, alcohol-based.
      • Avoid concerts, movies, crowded places.
      • We have cancelled business travel.
      • Do the basic hygiene, eg hand washing and avoiding touching face.
      • Stockpile your critical prescription medications. Many pharma supply chains run through China. Pharma companies usually hold 2-3 months of raw materials, so may run out given the disruption in China’s manufacturing.
      • Pneumonia shot might be helpful. Not preventative of COVID-19, but reduces your chance of being weakened, which makes COVID-19 more dangerous.
      • Get a flu shot next fall. Not preventative of COVID-19, but reduces your chance of being weakened, which makes COVID-19 more dangerous.
      • We would say “Anyone over 60 stay at home unless it’s critical”. CDC toyed with idea of saying anyone over 60 not travel on commercial airlines.
      • We at UCSF are moving our “at-risk” parents back from nursing homes, etc. to their own homes. Then are not letting them out of the house. The other members of the family are washing hands the moment they come in.
      • Three routes of infection
        • Hand to mouth / face
        • Aerosol transmission
        • Fecal oral route
  • What if someone is sick?
    • If someone gets sick, have them stay home and socially isolate. There is very little you can do at a hospital that you couldn’t do at home. Most cases are mild. But if they are old or have lung or cardio-vascular problems, read on.
    • If someone gets quite sick who is old (70+) or with lung or cardio-vascular problems, take them to the ER.
    • There is no accepted treatment for COVID-19. The hospital will give supportive care (eg IV fluids, oxygen) to help you stay alive while your body fights the disease. ie to prevent sepsis.
    • If someone gets sick who is high risk (eg is both old and has lung/cardio-vascular problems), you can try to get them enrolled for “compassionate use" of Remdesivir, a drug that is in clinical trial at San Francisco General and UCSF, and in China. Need to find a doc there in order to ask to enroll. Remdesivir is an anti-viral from Gilead that showed effectiveness against MERS in primates and is being tried against COVID-19. If the trials succeed it might be available for next winter as production scales up far faster for drugs than for vaccines. [More I found online.]
    • Why is the fatality rate much higher for older adults?
      • Your immune system declines past age 50
      • Fatality rate tracks closely with “co-morbidity”, ie the presence of other conditions that compromise the patient’s hearth, especially respiratory or cardio-vascular illness. These conditions are higher in older adults.
      • Risk of pneumonia is higher in older adults.
  • What about testing to know if someone has COVID-19?
    • Bottom line, there is not enough testing capacity to be broadly useful. Here’s why.
    • Currently, there is no way to determine what a person has other than a PCR test. No other test can yet distinguish "COVID-19 from flu or from the other dozen respiratory bugs that are circulating”.
    • A Polymerase Chain Reaction (PCR) test can detect COVID-19’s RNA. However they still don’t have confidence in the test’s specificity, ie they don’t know the rate of false negatives.
    • The PCR test requires kits with reagents and requires clinical labs to process the kits.
    • While the kits are becoming available, the lab capacity is not growing.
    • The leading clinical lab firms, Quest and Labcore have capacity to process 1000 kits per day. For the nation.
    • Expanding processing capacity takes “time, space, and equipment.” And certification. ie it won’t happen soon.
    • UCSF and UCBerkeley have donated their research labs to process kits. But each has capacity to process only 20-40 kits per day. And are not clinically certified.
    • Novel test methods are on the horizon, but not here now and won’t be at any scale to be useful for the present danger.
  • How well is society preparing for the impact?
    • Local hospitals are adding capacity as we speak. UCSF’s Parnassus campus has erected “triage tents” in a parking lot. They have converted a ward to “negative pressure” which is needed to contain the virus. They are considering re-opening the shuttered Mt Zion facility.
    • If COVID-19 affected children then we would be seeing mass departures of families from cities. But thankfully now we know that kids are not affected.
    • School closures are one the biggest societal impacts. We need to be thoughtful before we close schools, especially elementary schools because of the knock-on effects. If elementary kids are not in school then some hospital staff can’t come to work, which decreases hospital capacity at a time of surging demand for hospital services.
    • Public Health systems are prepared to deal with short-term outbreaks that last for weeks, like an outbreak of meningitis. They do not have the capacity to sustain for outbreaks that last for months. Other solutions will have to be found.
    • What will we do to handle behavior changes that can last for months?
      • Many employees will need to make accommodations for elderly parents and those with underlying conditions and immune-suppressed.
      • Kids home due to school closures
    • [Dr. DeRisi had to leave the meeting for a call with the governor’s office. When he returned we asked what the call covered.] The epidemiological models the state is using to track and trigger action. The state is planning at what point they will take certain actions. ie what will trigger an order to cease any gatherings of over 1000 people.
  •  
    • Where do you find reliable news?
      • The John Hopkins Center for Health Security site. Which posts daily updates. The site says you can sign up to receive a daily newsletter on COVID-19 by email. [I tried and the page times out due to high demand. After three more tries I was successful in registering for the newsletter.]
      • The New York Times is good on scientific accuracy.
  • Observations on China
    • Unlike during SARS, China’s scientists are publishing openly and accurately on COVID-19.
    • While China’s early reports on incidence were clearly low, that seems to trace to their data management systems being overwhelmed, not to any bad intent.
    • Wuhan has 4.3 beds per thousand while US has 2.8 beds per thousand. Wuhan built 2 additional hospitals in 2 weeks. Even so, most patients were sent to gymnasiums to sleep on cots.
    • Early on no one had info on COVID-19. So China reacted in a way unique modern history, except in wartime.
  •  
    • Every few years there seems another: SARS, Ebola, MERS, H1N1, COVID-19. Growing strains of antibiotic resistant bacteria. Are we in the twilight of a century of medicine’s great triumph over infectious disease?
  •  
    •  
      • "We’ve been in a back and forth battle against viruses for a million years."
      • But it would sure help if every country would shut down their wet markets.
      • As with many things, the worst impact of COVID-19 will likely be in the countries with the least resources, eg Africa. See article on Wired magazine on sequencing of virus from Cambodia.
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Old Mar 13, 2020 | 8:40 am
  #3865  
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Originally Posted by cmtlatitudes
Clearly he not stupid, but I am confused by some of his statements. Last evening he was a guest on an ABC news show, "America This Week w/ Eric Bolling: 'Coronavirus - Plan Don't Panic'. In response to questions by Bolling, he blamed the current situation outside of China and South Korea, on Italy, that they did not confine travel. Wasn't Italy was actually the first EU nation to ban airline travel with China, days prior the US bans?

He may have meant travel within Italy so it spread to the whole country
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Old Mar 13, 2020 | 8:41 am
  #3866  
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Originally Posted by cmtlatitudes
Wasn't Italy was actually the first EU nation to ban airline travel with China, days prior the US bans?
You are correct....
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Old Mar 13, 2020 | 8:50 am
  #3867  
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Originally Posted by boerne
UCSF from March 11, this type of analysis is not altered by politics. Note the mention that the CDC was toying with the idea of banning commercial flights for those over 60. Guess what, they still may.
from various news reports, it was a CDC recommendation for older and frail people to avoid air travel that was shot down by the WH.

https://abcnews.go.com/Health/wireSt...s-fly-69462660
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Old Mar 13, 2020 | 8:53 am
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Originally Posted by boerne
There are plenty of laws the President can invoke, like shut down the internet, and all commercial flying.
(bolding mine)

THAT will stop the spread of COVID-19!
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Old Mar 13, 2020 | 9:09 am
  #3869  
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Spain has entered a State of Alert (or State of Alarm)

https://english.elpais.com/politics/...us-spread.html
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Old Mar 13, 2020 | 9:12 am
  #3870  
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Originally Posted by narvik
(bolding mine)

THAT will stop the spread of COVID-19!

Well, it will stop people from getting health advice on Facebook to ignore it because its only the flu.
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