Originally Posted by
Eastbay1K
A TA can easily add multiple FFNs to a PNR. (Apollo example from the help screen - >MP*UA1234567*DL12345)
I'd suggest that the OP's travel department contact the AA sales rep to send out a training memo. The only likely thing that would happen by plating on the wrong carrier (and the system wouldn't automatically do that,and I don't remember the last decade that I actually saw a physical plate-issued ticket) is a debit memo back to the issuing agency.
This is the correct answer. If I were the OP, I would insist that my corporate travel agent resolve this matter. It is their job to resolve these types of isses.