I love Brussels - 3 trips in 5 years! You've picked a great time of year as it's far nicer in the summer than in February when it was so cold that you needed to buy tights (hose) to wear under your jeans!!
You can buy a 3 day tram/bus/metro pass for just €9 which gets you around the city with ease
I would highly recommend the
Lonely Planet Best of Brussels guidebook for a short trip.
Some places we've enjoyed are
Drinks at the Grand Place late in the evening when the light show begins - so atmospheric
A tour of the
Cantillon brewery
Incredible biscuits & cookies from
Dandoy
Chocolate from
Planete Chocolate
A relaxed meal at
L'Ultime Atome which is a 5-10 minute walk from your hotel - great food & a spectacular beer list
Lunch or dinner at my favourite Belgian restaurant
int'spinnekopke.
They have a set lunch menu Mon-Fri for about €13 - amazing value