My miles finally posted, but I feel cheated in the way they were processed.

Flew 6 segments (each different flight numbers):
HNL-KOA, KOA-HNL-LIH, LIH-HNL-OGG, OGG-HNL

However they reduced the KOA-HNL-LIH to KOA-LIH and LIH-HNL-OGG to LIH-OGG, basically giving me credit for only 1 flight without the transfer for both days. Again, these were all flown on different flight numbers.

Is this the way Hawaiian does it? Should I bother calling either Hawaiian/Continental to complain? It's basically 1,000 miles (EQM too) and 2 qualifying segments, although admittedly it won't change my qualification for next year.

Thoughts?