2. If you tell them that you are only there a short while they of course will only give you an emergency passport! What I and others have been saying, for quite awhile is that some people are getting their FULL passports back in 4-5 business days. There is however no guarantee of this, and it can easily take several weeks and no one will guarantee anything!
3. As far as I can see Indonesia STILL has "Visa on Arrival" and evisa is still just an option. So all you are saving is a possible queue.