As long as the first flight is JAL, it is certain that you will get all your boarding passes at the first airport, and for any Oneworld partner it should basically also be a given. You will still need to reclaim luggage at Haneda and then drop it again at Narita.

The APEC travel card should basically mean more or less zero wait at immigration. As for entry requirements, you need to complete the visit Japan website, and would need a boosted vaccination to make entry easy. If you are not boosted, you will need a PCR test in advance. I am assuming that these requirements will more or less be gone by mid May timing when covid gets downgraded to same status as flu.

Generally speaking, the connection time should be fine.