You somehow need to get a good phone agent (not text) to reach out to the SM desk with you holding on the phone and the agent going back and forth. Have the ticket numbers handy. SM can see that these were all flown. Just an IT glitch (one of so many) that you will have to patiently navigate.

If all else fails then call refunds and say you want an ecredit for all the unflown segments or you will file a DoT complaint. Of course they were all flown and you just want your MQDs.