Update
Update: false alarm on my part. Thanks to those whom replied, you were actually correct. No excuse, I just saw some things that had me somewhat concerned but I overreacted.
App corrected itself today, last ANA leg was removed, and mileage accrual is now showing correctly once again for future flights.
Mileage posted to my account for both PQM and PQD.
All is well.
Thanks for your assistance