Yes, actually alot more hotels are becoming , if they weren't before, gay friendly. The Kimpton Group actually is offering a special rate on thier website for honeymooning same sex couples.

In other threads here, you notice my asking questions about a few b&B's. Especially those in San Francisco. I had made reservations at them, but ended up scoring a sweet deal at a hotel w/ an awesome location off Hotwire thanks to some knowledge.

Places can really be a crap shoot. Best of luck with all of your travels and hope that you have a great time.