" Day 5 - Kyoto
- Checkout of hotel early
- Shinkansen from Tokyo Station to Kyoto Station, arrive at ~11am

Kyoto Itinerary:
- Fushimi Inari via Nara Line to Fushimi Inari Station
- Kiyomizu-dera
- Ginkaku-ji
- Nijo Castle
- Arashiyama
Can we fit all of this in or is there some order to doing all of this?

- Check in at Hiiragiya Ryokan, the bags would have arrived already right?

Day 6 - Nara
- Checkout of Hiiragiya, have bags send to Hyatt or HND already?
- Nara Line from Kyoto Station
- Feed Deer
- What else can we do around Nara?

- Back to Kyoto Station
- Check in at Hyatt "

This part is impossible - particularly since it will be hotter than the hinges of hell and you will have to go slow, with numerous rest/refreshment breaks.

Suggest taking at least one day from your overly complicated Tokyo stay and actually see some of Kyoto and Nara rather than simply blow through as fast as you can. The historical park in Nara can keep one occupied for over half a day alone.