Sorry -- I hadn't looked back at this thread in a while. To answer you, MSP, the marriage certificate in New York State shows both maiden name and "new surname". When filling out the paperwork (in New York State), it asked if you intend to change your surname. She did intend that, and so the marriage certificate shows her "Premarriage Surname" and "New Surname" (with the words "if applicable" in parenthesis). She has not legally changed her surname from the "premarriage" name and only uses my last name on things like Facebook.
At any rate, I'm still not sure how to go about Global Entry with this.....so I suppose we'll have to wait until we are about to have children and will stop traveling for a bit to get this figured out :-).