Originally Posted by
Cymro
Probably but the OP "held off" on seat selection for the CE flight.
This could mean that (s)he didn't bother checking but (s)he shouldn't have been asked to pay if the original booking was in J. Although if the upgrade was a fare upgrade rather than done using Avios, the short-haul would presumably have rebooked into J as well.
Before upgrading the first leg, I was indeed asked to pay for seat selections for the CE flight, which was why I held off.