Even though MSN is smaller, the volume on Delta is huge and the fares are HIGH. They are regularly fully booked/asking for volunteers due to the high number of corporate commuters (think Epic, American Family, Oscar Meyer, consultants, etc.). In fact, it seems to be one of the routes keeping the airlines alive:
DOT Rankings for 4Q 2014
MKE gets more frequent service on smaller planes. It's a trade off.