The last Skyliner should get you in to Keisei Ueno station by 23:00, so you should still have plenty of time to connect to subway. If the subway stopped running when you arrive at Tokyo, you can still take taxi and cost a lot less than from NRT.

The bus services run later than the trains. The last Heiwa Kotsu bus is at 22:30, and the last limousine bus to TCAT is at 22:55. The last Keisei bus is at 23:15. Heiwa Kotsu and Keisei buses are the discount bus service priced at around 1000 yen.

Heiwa Kotsu Narita Bus timetable
Keisei Bus timetable

As Keisei trains and buses have the latest departure times, I would just beeline to the Keisei counter and have them put me on the next Skyliner or bus.