Again... changing the first leg of any ticket with cause a re-price. You can't assume the S class fare you bought a while back is still in the market place.
Agreed that the assumption should not be made. In case it wasn't clear above the new route had been checked by me as pricing onto exactly the same 6/7 character fare code as the original itinerary.
Having established that I thought that having already bought the fare it meant I had the option to reroute on anything that was valid for that fare and only pay change fees. I didn't know that I would have to repurchase the fare, so that is a good thing to learn ^.
To cut a potentially long story short the TA have (either on their own or through negotiation with AC) moved me back to a T+ fare and acknowledged that they have learned a lot about the AC fare structure that they didn't previously know

.