Our itinerary also showed upgrade denied for last Saturday, 24 April, JFK-IAD. SFO-JFK upgrade cleared using CR-1s two weeks before departure. I called 1K desk and she informed me that we were still on the waitlist for JFK-IAD. Checked-in online, SFO-JFK-IAD, showed upgrade instrument previously applied. We were #1 and #2 on the screen at JFK gate. Cleared 20 minutes before departure.