Originally Posted by
magda101
1. Can we use our JR Pass one last time on Tuesday June 29 to go to Narita (Since we activated our 7days pass on Tues June 22)?
No. The seven day pass is valid for seven calendar days.
If you were to move your Ghibli museum day to the front of your trip, you might fit your Tokyo to Kyoto return trip and the trip to NRT within seven days.
Originally Posted by
magda101
2. For our first 4 days in Tokyo (June 18 to June 22), do we need to use JR pass in Tokyo?
If you pay for individual subway and train fares you're unlikely to spend more than a few hundred yen per day each.
Originally Posted by
magda101
I feel transportation is not cheap in Japan

Really? Why?