I vaguely remember something like that.
What you might want to try is contact cust service, tell them your points didn't post properly for the room rate, tell them you can email or fax the folio, & ask them to credit you the corrected points. Don't mention the breakfast issue at all. Unless the folio mentions brekkie split out (not likely), they may just post the difference. Best case, yes. Worst case, no.
Cheers.