I purchased a DJ coded flight prior to Jan 13, 2013 and flew the segment in late January. My understanding of the chart is that I should be receiving 100% miles and MQMs for the segment, but have yet to receive a thing. i take it, I should submit the missing miles claim now.
I can't speak for the Delta side of things but Virgin Australia have just undergone a major change of reservation system and everything there is a little screwy at the moment. Definitely put your claim in but don't surprised if everything takes a while to sort out at the moment.