Enjoy it.
Unless you typically spend every waking minute together, you won't miss being together a few nights during the week. Call/text/Skype. How many nights do one of you already work late?
Let her use your travel time for things you wouldn't be around for anyway (girls night out, errands) or even planning those days st the one she works late at work herself. Then use the weekends for together time.
Biggest "conflict" is that if your travel requires lots of business dinners -- after a while you want to stay home and cook while she wants to go out somewhere nice to make up for lost time.